Background
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Multi scale modeling of 2450 MHz electric field effects on microtubule mechanical properties

Journal: Journal of Molecular Graphics and Modelling (10933263)Year: 1 November 2016Volume: 70Issue: Pages: 122 - 128
Setayandeh S.S.Lohrasebi A.a
DOI:10.1016/j.jmgm.2016.09.016Language: English

Abstract

Microtubule (MT) rigidity and response to 2450 MHz electric fields were investigated, via multi scale modeling approach. For this purpose, six systems were designed and simulated to consider all types of feasible interactions between α and β monomers in MT, by using all atom molecular dynamics method. Subsequently, coarse grain modeling was used to design different lengths of MT. Investigation of effects of external 2450 MHz electric field on MT showed MT less rigidity in the presence of such field, which may perturb its functions. Moreover, an additional computational setup was designed to study effects of 2450 MHz field on MT response to AFM tip. It was found, more tip velocity led to MT faster transformation and less time was required to change MT elastic response to plastic one, applying constant radius. Moreover it was observed smaller tip caused to increase required time to change MT elastic response to plastic one, considering constant velocity. Furthermore, exposing MT to 2450 MHz field led to no significant changes in MT response to AFM tip, but quick change in MT elastic response to plastic one. © 2016 Elsevier Inc.


Author Keywords

AFM experimentCoarse grain methodMicrotubuleMolecular dynamicsMulti scale modelingOscillating electric field

Other Keywords

Biomechanical PhenomenaElastic ModulusElectricityMicroscopy, Atomic ForceMicrotubulesModels, MolecularTubulinElectric fieldsMolecular dynamicsNanoprobesRigidityalpha tubulinbeta tubulinmonomerCoarse grain modelCoarse-grain methodConstant velocitiesElastic responseMolecular dynamics methodsMulti-scale ModelingRequired timeArticleatomic force microscopybiomechanicsbiotransformationcell functionelasticityelectric activityelectric fieldfeasibility studyhumanmathematical analysismathematical modelmicrotubulemolecular interactionmulti scale modelingnonhumanpriority journalprotein protein interactionprotein structureradiofrequencystatic electricityvelocityYoung moduluschemistrymolecular modelElectric field effects